Tfsitescan

 

Home Tfsitescan Alibaba 2.1 Promoter Scan NNPP

 

Tfsitescan is maintained by the Insitute for Transcriptional Informatics. 

Tfsitescan identifies potential transcription factor binding sites in a nucleotide sequence and constructs an image map associated with the sequence analysis results.  The putative binding sites are derived from a transcription factors database.

 

EXAMPLE

(Image taken from http://www.ifti.org/cgi-bin/ifti/Tfsitescan.pl)

There are three parameters which can be set:

bullet   The Promoter Sequence
          As noted within the Tfsitescan example above, Tfsitescan works best with
            sequences which are around 500 nucleotides in length.  It will not accept
            sequences with more than 1500 nucleotides.
 
bullet    Database (2 Choices)
          There are two choices:
            1. Tfsites:  includes 7188 entries
            2. siteProfiles: includes 322 entries which contain more detail about the specific Tfsite
 
bullet    Sites Query Parameters
          There are 7 taxon specific categories
           
Mammalian Plant
Yeast Amphibian
Avian Prokaryotic
Drosophila All

 

Click here to see a Sample Output

 

Last Updated: 12/01/2003

Send questions, comments & snide remarks, to:  Fernando Solorzano