Paste up to
10000
query sequences into this box:
Or type local file path here:
FASTA
formats required [
text box data has higher precedence than file upload
]
Select a program
blastp
blastp
blastn
blastx
tblastx
Select a database
non-redundant (protein)
non-redundant (protein)
Swiss-Prot (protein)
Protein Data Bank (protein)
Drosophila (protein)
yeast (protein)
Magnaporthe grisea proteins (protein)
Neurospora crassa proteins (protein)
S. pombe proteins (protein)
Arabidopsis TAIR6 release (protein)
mitochondria (protein)
non-redundant (DNA)
human EST (DNA)
mouse EST (DNA)
others EST (DNA)
Drosophila (DNA)
yeast (DNA)
Protein Data Bank (DNA)
mitochondria (DNA)
vector subset of GenBank (DNA)
EPD Release 88-All Promoters (DNA)
EPD Release 88-Plant Promoters (DNA)
Eukaryotic rRNA (DNA)
Glomalean EST (DNA)
Mixed glomalean/plant EST (DNA)
Glomalean Protein (protein)
G. intraradices ERM ESTs trimmed (DNA)
G. intraradices ERM trimmed unigene (DNA)
G. intraradices ERM ESTminer (DNA)
JGI G. intraradices genomic contigs June 06 (DNA)
JGI G. intraradices fosmid ends June 06 (DNA)
NMSU G. intraradices genomic (DNA)
G. intraradices germ spore EST (DNA)
G. intraradices microarray (DNA)
G. intraradices kinases (DNA)
G. intraradices all sequences 2006 (DNA)
Magnaporthe grisea genes (DNA)
Neurospora crassa genes (DNA)
S. pombe CDS (DNA)
S. pombe chromosomes (DNA)
1577-99 (DNA)
phy-76 (DNA)
CGI.041106 (DNA)
Gossypium arboreum TIGR transcript (DNA)
Gossypium hirsutum TIGR transcript (DNA)
Gossypium raimondii TIGR transcript (DNA)
Gossypium 3 species TIGR transcript (DNA)
Cryphonectria parasitica 8X coverage of genome (DNA)
Cryphonectria parasitica ESTs (DNA)
[
Use correct program for query/database sequence types!
]
[
Description of sequence databases
]
Max E-value
Filter query
Max number of matches (<= 100)
Cost to open a gap
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Protein Substitution Matrix
BLOSUM62
BLOSUM62
BLOSUM45
BLOSUM50
BLOSUM80
BLOSUM90
PAM30
PAM70
Cost to extend a gap
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Default
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Advanced options
Sort results
E-value
# of matches
E-value
unsorted
Use html4blast report format (forced if number of sequences > 1000)
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(required field)
Password
(required field)